Is this still an issue?
you hover over a skill with mouse and press an f-key to assign it to shortcuts. TutorialTom even explains this.
(since 2014) Npc:says(_"You can also assign quick-select keys to programs. Simply hover over the program in the Skills/Program menu and press one of the keys [b]F5[/b] to [b]F12[/b]. Then, whenever you press this button, you will select the corresponding program.")
(also since 2014) { N_("activate_program0"), SDLK_F5, KMOD_NONE },
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